Example #1 Input Form for eXPatGen
This input form was saved from the initial setup of an eXPatGen Run. Submit this form to generate individual gene expression dynamics from each group's dynamics.
Environmental Matrix, Gene Groups Initially On (1) or Off (0)
Gene Group
1
2
3
4
5
6
Condition 1
Condition 2
Induction Matrix
Integer in matrix indicates the gene group number that induces that particular gene group (0 is no induction)
Gene Group
1
2
3
4
5
6
Env. Condition 1
Env. Condition 2
Repression Matrix
Integer in matrix indicates the gene group number that represses that particular gene group (0 is no repression)
Gene Group
1
2
3
4
5
6
Env. Condition 1
Env. Condition 2
Repression Behavior Parameters
Model: Sigmoidal
Time Offset for 50% Reduction [minutes]
Speed of Response
Induction Behavior Parameters for Each Gene Group
Gene Group 1:
Model: Sigmoidal
Number of Genes
Relative Gain
Std Dev
Time @ 50% Gain [minutes]
Std Dev
Speed of Response
Std Dev
Baseline Value
Std Dev
Gene Group 2:
Model: Sigmoidal
Number of Genes
Relative Gain
Std Dev
Time @ 50% Gain [minutes]
Std Dev
Speed of Response
Std Dev
Baseline Value
Std Dev
Gene Group 3:
Model: Sigmoidal
Number of Genes
Relative Gain
Std Dev
Time @ 50% Gain [minutes]
Std Dev
Speed of Response
Std Dev
Baseline Value
Std Dev
Gene Group 4:
Model: Sigmoidal
Number of Genes
Relative Gain
Std Dev
Time @ 50% Gain [minutes]
Std Dev
Speed of Response
Std Dev
Baseline Value
Std Dev
Gene Group 5:
Model: Sigmoidal
Number of Genes
Relative Gain
Std Dev
Time @ 50% Gain [minutes]
Std Dev
Speed of Response
Std Dev
Baseline Value
Std Dev
Gene Group 6:
Model: Sigmoidal
Number of Genes
Relative Gain
Std Dev
Time @ 50% Gain [minutes]
Std Dev
Speed of Response
Std Dev
Baseline Value
Std Dev
Individual gene spots will be generated from group parameters.
Comments or problems? Write to
Dennis Michaud