Example #2 Final Input Form for eXPatGen

This input form was saved from the final parameters of an eXPatGen Run. Submit this form (button at the end of the page) to begin the simulation. Two extra environmental conditions have been added to this example to allow the user to explore the effects of modifying the network.

Simulated Condition #1 (Labeled Green):
Simulated Condition #2 (Labeled Red):

Environmental Matrix, Gene Groups Initially On (1) or Off (0)


Gene Group 1 2 3 4 5 6 7 8 9 10
Condition 1
Condition 2
Condition 3
Condition 4

Induction Matrix


Gene Group 1 2 3 4 5 6 7 8 9 10
Env. Condition 1
Env. Condition 2
Env. Condition 3
Env. Condition 4

Repression Matrix


Gene Group 1 2 3 4 5 6 7 8 9 10
Env. Condition 1
Env. Condition 2
Env. Condition 3
Env. Condition 4

Repression Behavior Parameters


Model: Sigmoidal
Time Offset for 50% Reduction [minutes]
Speed of Response

Induction Model Chosen for Each Group


Group 1 Model: Sigmoidal
Group 2 Model: Sigmoidal
Group 3 Model: Sigmoidal
Group 4 Model: Sigmoidal
Group 5 Model: Sigmoidal
Group 6 Model: Sigmoidal
Group 7 Model: Sigmoidal
Group 8 Model: Sigmoidal
Group 9 Model: Sigmoidal
Group 10 Model: Sigmoidal

Induction Behavior Parameters for Each Spot


Gene 1:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 2:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 3:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 4:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 5:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 6:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 7:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 8:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 9:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 10:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 11:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 12:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 13:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 14:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 15:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 16:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 17:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 18:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 19:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 20:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 21:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 22:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 23:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 24:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 25:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 26:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 27:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 28:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 29:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 30:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 31:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 32:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 33:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 34:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 35:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 36:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 37:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 38:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 39:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 40:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 41:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 42:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 43:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 44:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 45:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 46:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 47:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 48:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 49:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 50:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 51:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 52:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 53:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 54:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 55:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 56:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 57:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 58:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 59:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 60:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 61:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 62:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 63:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 64:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 65:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 66:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 67:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 68:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 69:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 70:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 71:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 72:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 73:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 74:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 75:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 76:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 77:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 78:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 79:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 80:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 81:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 82:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 83:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 84:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 85:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 86:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 87:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 88:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 89:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 90:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 91:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 92:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 93:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 94:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 95:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 96:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 97:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 98:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 99:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Gene 100:
Gene Name
Relative Gain
Time @ 50% Gain [minutes]
Speed of Response
Baseline Value

Comments or problems? Write to Dennis Michaud