Publications
Books

B. A. Ogunnaike, Random Phenomena: Fundamentals of Probability & Statistics for Engineers, CRC Press/Taylor & Francis, Boca Raton, FL., 2009.

J. B. Rawlings, B. A. Ogunnaike, and J. W. Eaton, Editors, Chemical Process Control VI, AIChE Press, N.Y., 2002.

F. J. Doyle, R. K. Pearson, and B. A. Ogunnaike, Identification and Control Using Volterra Models, Springer Verlag, London, 2002.

B. A. Ogunnaike and W. H. Ray, Process Dynamics Modeling and Control, Oxford University Press, N.Y., 1994.

B. A. Ogunnaike, Principles of Mathematical Modelling and Analysis in Chemical Engineering, DONE Publishers, Lagos, Nigeria, 1985.
Book Chapters

M. St. Amand, P. Millili, M. McCabe, and B. A. Ogunnaike. "A Strategic vision for integrated PAT in biologics manufacturing and advanced control" Ch. 2 in PAT Applied in Biopharmaceutical Process Development and Manufacturing: An Enabling Tool for QualitybyDesign, Eds. Undey et. al CRC Press, Boca Raton, Fl. 2011.

B. A. Ogunnaike, G. François, M. Soroush, and D. Bonvin, "Control of Polymerization Processes," Chapter 12 in The Control Handbook, 2nd Edition, Ed. William Levine, CRC Press, Boca Raton, FL. 2010.

M. R. Birtwistle, B. Kholodenko, and B. A. Ogunnaike, "Experimental Design for Parameter Identifiability in Biological Signal Transduction Modeling," Chapter 10 in Systems Analysis of Biological Networks, Ed. A. Jayaraman and J. Hahn, Artech House, London, 2009.

A.D. Shapiro, V. Agrawal, Dhurjati P.S., K.J Czymmek., B.A. Ogunnaike, and C. Zhang , "Systems Biology Explanations of CelltoCell Communication Coordinating the Arabidopsis Hypersensitive Response." pp275280 In: Biology of PlantMicrobe Interactions, Vol. 5, Sanchez F. and Geiger O. (Eds.) International Society for Molecular PlantMicrobe Interactions, St. Paul, Minnesota. 2006.

N. Hernjak, F.J. Doyle, III, B.A.Ogunnaike, and R.K. Pearson, "Chemical Process Characterization for Control Design" in Integration of Design and Control, P. Seferlis and M. Georgiadis (Eds), Elsevier 2004.

B.A. Ogunnaike "Nonlinear control of industrial processes," Chapter 10 of: Nonlinear Predictive Control, B. Kouvaritakis and M. Cannon (Eds), The Institution of Electrical Engineers, London, 2001.

J.D. Bomberger, D.E. Seborg, and B.A. Ogunnaike, "RBFN identification of an industrial polymerization reactor model" in: Application of Neural Networks and Other Learning Technologies in Process Engineering, I.M. Mujtaba and M.A. Hussain (Eds), Imperial College Press, London, 2001.

B.A. Ogunnaike and R.A. Wright, "Industrial applications of nonlinear control" in: Chemical Process Control V, J.C. Kantor, C.E. Garcia, and B. Carnahan (Eds), AIChE Press, NY 1997.

A. Banerjee, Y. Arkun, R.K. Pearson, and B.A. Ogunnaike, "H∞ control of nonlinear processes using multiple linear models," Chapter 12 of: Multiple Model Approaches to Modelling and Control, R. MurraySmith and T.A. Johansen (Eds), Taylor & Francis, London, 1997.

F.J. Doyle III, M.A. Henson, B. A. Ogunnaike, J.S. Schwaber, and I. Rybak, "Neuronal modeling of the baroreceptor reflex with applications in process modeling and control," Chapter 5 of: Neural Systems for Control, O. Omidvar and D.L. Elliot (Eds), Academic Press, San Diego, 1997.

R.K. Pearson and B.A. Ogunnaike, "Nonlinear model identification," Chapter 2 of: Nonlinear Process Control, M.A. Henson and D.E. Seborg (Eds), PrenticeHall, Englewood Cliffs, NJ, 1996.

B.A. Ogunnaike, "Controller design for process systems," Chapter 33 of: Handbook of Heat and Mass Transfer, Vol. 3, N.P. Cheremisinoff (Ed), Gulf Publishers, West Orange, NJ, 1989.
Journal Articles
2011

E.S. Welf, U.P. Naik, and B.A. Ogunnaike, "Probabilistic modeling and analysis of the effects of extracellular matrix density on the sizes, shapes, and locations of integrin clusters in adherent cells," BMC Biophysics., 4:15, 2011.
2010

G. Miller, B.A. Ogunnaike, J. S. Schwaber, and R. Vadigepalli, "Robust dynamic balance of AP1 transcription factors in a neuronal gene regulatory network", BMC Systems Biology, 4:171, 2010.

S.W. Chung, C.R. Cooper, M. C. FarachCarson, and B. A. Ogunnaike, "A Control Engineering Model for Resolving the TGFβ Paradox in Cancer," Adv. in Theory of Control, Signals 407, 255268., 2010.

S.C. Garge, M.D. Wetzel, and B.A. Ogunnaike, "InferenceBased Scheme for Controlling Product EndUse Properties in Reactive Extrusion Processes," Ind. Eng. Chem. Res., 49, 80218034, 2010.

B.A. Ogunnaike, C. A. Gelmi, J. S. Edwards, "A probabilistic framework for microarray data analysis: Fundamental probability models and statistical inference," J. of Theor. Biol., 264, 211222, 2010.

T. Nakakuki, M.R. Birtwistle, Y. Saeki, N. Yumoto, K. Ide, T. Nagashima, L. Brusch, B.A. Ogunnaike, M. OkadaHatakeyama, and B.N. Kholodenko, "LigandSpecific cFos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics," Cell, 141, 884896, 2010.
2009

E.S. Welf, B.A. Ogunnaike, and U.P. Naik, "Quantitative statistical description of integrin clusters in adherent cells," IET Syst. Biol., 3, (5), 307316, 2009.

M. R. Birtwistle, B. Kholodenko, and B. A. Ogunnaike, "Experimental Design for Parameter Identifiability in Biological Signal Transduction Modeling"; Chapter 10 in Methods in Bioengineering, Ed. A Jayaraman and J Hahn, Artech House, 2009.

A. M. Shough, D. J. Doren, and B. A. Ogunnaike, " Transition Metal Substitution in ETS10: DFT Calculations and a Simple Model for Electronic Structure Prediction," Chem. Mater., 21, 12321241, 2009.

K. Mukati, B. A. Ogunnaike, E. Eser, S. Fields, R W. Birkmire, "Scaleup of Cu(InGa)Se_{2} Thin Film Coevaporative Physical Vapor Deposition Process. 2: Evaporation Source Design," Ind. Eng. Chem. Res., 48 (13), 59925999, 2009.

K. Mukati, B. A. Ogunnaike, E. Eser, S. Fields, R W. Birkmire, "Scaleup of Cu(InGa)Se_{2} Thin Film Coevaporative Physical Vapor Deposition Process. 1: Evaporation Source Model Development," Ind. Eng. Chem. Res., 48 (13), 59755991, 2009.

S.W. Chung, F.L. Miles, R.A. Sikes, C.R. Cooper, M. C. FarachCarson, and B. A. Ogunnaike, "Quantitative Modeling and Analysis of the Transforming Growth Factor Signaling Pathway," Biophys. Journal 96, 17331750, 2009.

K. Mukati, M. Rasch and B. A. Ogunnaike, "An Alternative Structure for next generation Regulatory Controllers: Part II Stability analysis and tuning rules and experimental Validation," J. Process Control, 19 (2), 272287, 2009. doi:10.1016/j.jprocont.2008.03.004.
2008

AJ Su, CC Yu, and B. A. Ogunnaike, "On the interaction between measurement strategy and control performance in semiconductor manufacturing," J. Process Control, 18 (3), 266276, 2008.
2007

J. G. VanAntwerp, A. P. Featherstone, R. D. Braatz, and B. A. Ogunnaike, "Crossdirectional control of sheet and film processes," Automatica, 43, 191211, 2007.

M. R. Birtwistle, M. Hatakeyama, N. Yumoto, B. A. Ogunnaike, J. B. Hoek, and B. N. Kholodenko, "Liganddependent responses of the ErbB signaling network: experimental and modeling analyses," Molecular Systems Biology 3:144,116, 2007.

A. V. Tendulkar, B. A. Ogunnaike, and P. P. Wangikar, "Protein local conformations arise from a mixture of Gaussian distributions," J Biosciences, 32(5), 899908, 2007.

A. Malcolm, J. Polan, B. A. Ogunnaike and A. Linninger, "Integrating Systems Design and Control using Dynamic Flexibility Analysis", AIChE J, 53, (8), 20482061, 2007.

S.C. Garge, M.D. Wetzel, and B.A. Ogunnaike, "Quantification of the Melting Process in a Corotating TwinScrew Extruder: A Hybrid Modeling Approach," Polymer Eng. Sci., 47, (7), 10401051, 2007.

A. Samant, B. A. Ogunnaike and D. G. Vlachos, "A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks", BMC Bioinformatics, 8:175, 2007.
2006

T.F. Edgar, B.A. Ogunnaike, and K.R. Muske, "A global view of graduate process control education;" Comp. and Ch. E, 30 (10), p.17631774, 2006.

T. F. Edgar, B. A. Ogunnaike, J. J. Down, K. R. Muske, B. W. Bequette, "Renovating the undergraduate process control course"; Comp. and Ch. E. 30 (10), p.17491762, 2006.

D.E. Zak, H. Hao, R. Vadigepalli, G. Miller, B.A. Ogunnaike and J. S. Schwaber, "Systems Analysis of circadian contextdependent neuronal epidermal growth factor receptor signaling", Genome Biology, 7:R48, 2006.(doi:10.1186/gb200676r48).

N. Yalamanchili, D. E. Zak, B. A. Ogunnaike, J. S. Schwaber, A. Kriete, and B. N. Kholodenko, "Quantifying gene network connectivity in silico: Scalability and accuracy of a modular approach" IEE Proceedings Systems Biology 153, 236246, 2006.

H. Hao, Zak D. E., Sauter T, Schwaber J, and B. A. Ogunnaike, "Modeling the VPAC2Activated cAMP/PKA Signalling Pathways: From Receptor to Circadian Clock Gene Induction", Biophys J., 90, 15601571, 2006.

B. A. Ogunnaike, and K. Mukati, "Design, development and implementation of an alternative structure for next generation regulatory controllers", J. of Process Control, 16, 499509, 2006.

B. A. Ogunnaike, "Elucidating the digital control mechanism for DNA damage repair with the p53Mdm2 System: Single cell data analysis and ensemble modeling", J. Roy. Soc. Interface, 3, 175184, 2006.
2005

K. J. Kauffman, B. A. Ogunnaike and J. S. Edwards, "Designing experiments that aid in the identification of regulatory networks" Br. Funct. Genomic and Proteomics, 4, (4) 331342, 2006 Published online Dec 2005, doi:10.1093/bfgp/eli004.

J. Merritt, J. A. Butz, B. A. Ogunnaike, and J. S. Edwards, "Parallel Analysis of Mutant Human Glucose 6Phosphate Dehydrogenase in Yeast Using PCR Colonies", Biotech. and Bioeng., 92(5):519531, 2005; Published online 22 August, 2005. doi: 10.1002/bit.20726.

A. V. Tendulkar, M.A. Sohoni, B.A. Ogunnaike and P. P. Wangikar, "A geometric invariantbased framework for the analysis of protein conformational space", Bioinformatics, 21 (8), 36223628, 2005.

M. Pottmann, B.A. Ogunnaike, and J.S. Schwaber, "Development and Implementation of a High performance Sensor System for an Industrial Polymer Reactor", Ind. Eng. Chem. Res., 44, 26062620, 2005.

D.E. Zak, R. Vadigepalli, G E. Gonye, F.J. Doyle III, J.S. Schwaber, and B.A. Ogunnaike, "Unconventional systems analysis problems in molecular biology: A case study in gene regulatory network modeling," Comp. & Chem. Eng., 29, 547563, 2005.
2004

B. A. Ogunnaike, "Design of multivariable controllers by direct synthesis: Theory and experimental implementation," Special Issue of the J. Chin. Inst. Chem. Engrs., 35, 335351, 2004.

R. J. Hendershot, W. B. Rogers, C. M. Snively, B. A. Ogunnaike, J. Lauterbach, "Development of NOx Storage and Reduction Catalysts Using Statistically Guided Highthroughput Experimentation," Catalysis Today, 98, 375385, 2004.

V. Mikkilineni, R.D. Mitra, J.R. DiTonno, J. Merritt, G.M. Church, B.A. Ogunnaike, and J.S. Edwards, "Digital quantitative measurements of gene expression," Biotech. and Bioeng., 86, 117124, 2004.
2003

N. Mehranbod, M. Soroush, M. Piovoso, and B.A. Ogunnaike, "Probabilistic model for sensor fault detection and identification," AIChE J., 49, 17871802, 2003.

R.J. Brendel, B.A. Ogunnaike, and P.S. Dhurjati, "Nonlinear PI controllers based on loworder empirical process models," Ind. Eng. Chem. Res., 42, 46684677, 2003.

N. Zambare, M. Soroush, and B.A. Ogunnaike, "A method of robust multirate state estimation," J. of Process Control, 13, 337355, 2003.
2002

H. Perez, B.A. Ogunnaike, and S. Devasia, "Output tracking between points for nonlinear processes: Van de Vusse example," IEEE Trans. on Control Systems Technology, 10, 611617, 2002.
2001

R.S. Parker, D. Heemstra, F.J. Doyle III, R.K. Pearson, and B.A. Ogunnaike, "The identification of nonlinear models for process control using tailored 'plantfriendly' input sequences," J. of Process Control, 11 (2), 237250, 2001.

B.W. Bequette and B.A. Ogunnaike, "Chemical process control education and practice," IEEE Control Systems Magazine, 1017, April 2001.
2000

M.P. Harold and B.A. Ogunnaike, "Perspective: Process control in the evolving chemical industry," AIChE J., 46, 21232127, 2000.

G.Y. Zhu, M.A. Henson, and B.A. Ogunnaike, "A hybrid model predictive control strategy for nonlinear plantwide control," J. of Process Control, 10, 449458, 2000.

A. Adetayo, B.A. Ogunnaike, and M. Pottmann, "Developing an effective control strategy for granulation processes," KONA Powder and Particle, 17, 183189, 2000.

M. Pottmann, B.A. Ogunnaike, A.A. Adetayo, and B.J. Ennis, "Modelbased control of a granulation system," Powder Technology, 108, 192201, 2000.

S.A. Russell, D.G. Robertson, J.H. Lee, and B.A. Ogunnaike, "Modelbased quality monitoring of batch and semibatch processes," J. of Process Control, 10, 317332, 2000.
1999

A. Kordon, Y.O. Feuntes, B.A. Ogunnaike, and P.S. Dhurjati, "An intelligent parallel control system structure for plants with multiple operating regimes," J. of Process Control, 9, 453460, 1999.

S. Tatiraju, M. Soroush, and B.A. Ogunnaike, "Multirate nonlinear state estimation with application to a polymerization reactor," AIChE J., 45, 769780, 1999.
1998

Y. Chikkula, J.H. Lee, and B.A. Ogunnaike, "Dynamic scheduled model predictive control using hinging hyperplane models," AIChE J., 44, 26582674, 1998.

S.A. Russell, D.G. Robertson, J.H. Lee, and B.A. Ogunnaike, "Quality monitoring and control of Nylon 6,6 autoclaves," Chem. Eng. Sci., 53, 36853702, 1998.

S.A. Russell, P. Kesavan, J.H. Lee, and B.A. Ogunnaike, "Recursive databased prediction and control of batch product quality," AIChE J., 44, 24422458, 1998.
1997

Chien, ILung and B. A. Ogunnaike, "Modeling and Control of a TemperatureBased HighPurity Distillation Column", Chem. Eng. Comm., Vol. 158, 71105 (1997)

A. Banerjee, Y. Arkun, B.A. Ogunnaike, and R.K. Pearson, "Estimation of nonlinear systems using linear multiple models," AIChE J., 43, 12041226, 1997.

F. Allgöwer and B.A. Ogunnaike, "Dualmode adaptive control of nonlinear processes," Comp. & Chem. Eng., 21, S155S160, 1997.
1996

B.A. Ogunnaike, "A contemporary industrial perspective on process control theory and practice," Annual Reviews in Control, 20, 18, 1996.

M. Pottmann, M.A. Henson, B.A. Ogunnaike, and J.S. Schwaber, "A parallel control strategy abstracted from the baroreceptor reflex," Chem. Eng. Sci., 52, 931945, 1996.

R.K. Pearson, B.A. Ogunnaike, and F.J. Doyle III, "Identification of structurally constrained secondorder Volterra models," IEEE Trans. Sig. Proc., 44, 28372846, 1996.

B.R. Maner, F.J. Doyle III, B.A. Ogunnaike, and R.K. Pearson, "Nonlinear model predictive control of a simulated polymerization reactor using secondorder Volterra models," Automatica, 32, 12851301, 1996.
1995

G.R. Sriniwas, Y. Arkun, I.L. Chien, and B.A. Ogunnaike, "Nonlinear identification and control of a highpurity distillation column: A case study," J. of Process Control, 5, 149162, 1995.

B.A. Ogunnaike, "The role of CACSD in contemporary industrial process control," IEEE Trans. on Control Systems Technology, 2, 4147, 1995.

F.J. Doyle III, B.A. Ogunnaike, and R.K. Pearson, "Nonlinear modelbased control using secondorder Volterra series models," Automatica, 31, 669714, 1995.

M.A. Henson, B.A. Ogunnaike, and J.S. Schwaber, "Habituating control strategies for process control," AIChE J., 41, 604618, 1995.

M.A. Henson, B.A. Ogunnaike, J.S. Schwaber, and F.J. Doyle, "The baroreceptor reflex: A biological control system with applications in chemical process control," Ind. Eng. Chem. Res., 33, 24532466, 1994.
1994

B.A. Ogunnaike, "Online modeling and predictive control of an industrial terpolymerization reactor," Int. J. of Control, 59, 711729, 1994.
1986

B.A. Ogunnaike and K.E.P. Adewale, "Dynamic matrix control for processes with time varying parameters," Chem. Eng. Comm. 47, 295, 1986.

B.A. Ogunnaike, "Controller design for nonlinear process systems via variable transformations," Ind. & Eng. Chem. Proc. Des. Dev., 25, 241, 1986.

B.A. Ogunnaike, "Dynamic matrix control: A nonstochastic, industrial process control technique with parallels in applied statistics," Ind. & Eng. Chem. Fund., 25, 712, 1986.
1985

B.A. Ogunnaike, "An optimal controller for discrete time delay systems requiring no prediction," Chem. Eng. Comm., 37, 249, 1985.
1984

B.A. Ogunnaike and W.H. Ray, "Incomplete state feedback for time delay systems: Observer applications in multidelay compensation," AIChE J., 30, 717, 1984.
1983

B.A. Ogunnaike, J.P. Lemaire, M. Morari, and W.H. Ray, "Advanced multivariable control of a pilot plant distillation column," AIChE J., 29, 632, 1983.
1982

B.A. Ogunnaike and W.H. Ray, "Computeraided multivariable control system design for processes with time delays," Comp. & Chem. Eng., 6, 311, 1982.
1981

B.A. Ogunnaike, "A new approach to observer design for time delay systems," Int. J. of Control, 33, 519, 1981.
1979

B.A. Ogunnaike and W.H. Ray, "Multivariable controller design for linear systems having multiple time delays," AIChE J., 25, 1043, 1979.